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There are 18 companies in the field of Bioinformatics on spotfolio that produce or deliver products, that utilize or research technologies or that are otherwise engaged in topics such as Genome, Sequencing, DNA, Contigs, RNA, Gene, Sequences, Whole-Genome .

Start-ups (3)

Early-stage companies (10)

Established companies (4)

The majority of these companies is located in the following countries.

United States (6)

China (3)

Taiwan (2)

Australia (1)

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FASMAC

established

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need JavaScript to build report and plots. Contigs are ordered from largest (contig #1) to smallest. Contigs are broken into nonoverlapping 100 bp windows ...

"lists_of_gc_info":null,"filenames":["ET2-2_scaffolds"]} { "# contigs" : "is the total number of contigs in the assembly.", "Largest contig" : "is the length of ...

", "N50" : "is the contig length such that using longer or equal length contigs produces half (50%) of the bases of the assembly. Usually there is no value ...

50%, so the technical definition is the maximum length x such that using contigs of length at least x accounts for at least 50% of the total assembly length ...

"NG50" : "is the contig length such that using longer or equal length contigs produces half (50%) of the bases of the reference genome. This metric is ...

", "N75" : "is the contig length such that using longer or equal length contigs produces 75% of the bases of the assembly. Usually there is no value that

ATGENOMIX Atgenomix Inc.

early-stage

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coalescing around the barcode indexes of reads into long-range haplotype contigs. It’s not just about the product. It’s about the entire experience and

Phase Genomics

early-stage

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Analysis Workflow - Short-read shotgun read pairs (FASTQ format) or assembled contigs (FASTA format – any sequencing technology and assembler may be used) - Hi-C ...

complete scaffolds Proximo assigns contigs to scaffolds, arranges contigs into a linear ordering, and then orients contigs in such a way as to maximize the ...

scaffolds; very rarely less than 95% - Able to identify and break misjoined contigs - Scaffolds will have all polishing steps performed – open source tools ...

Proximo Genome Scaffolding project. Proximo Analysis Workflow - Assembled contigs/intermediate scaffolds (FASTA format) - Hi-C read pairs (FASTQ format) - ...

scaffolds Combine Hi-C data with long reads to create two true phased sets of contigs for diploid organisms. Use FALCON-Phase in combination with Proximo to produce ...

heterozygous sequences originated on the same molecule. FALCON-Phase examines contigs and haplotigs (e.g., the results of FALCON-Unzip or purge_haplotigs) in

Application Note Convert contigs into chromosomes to produce gold and platinum genomes The Proximo™ Platform utilizes the ultra-long-range information ...

comprised of thousands of contigs, with as many gaps and errors. Without the long-range information provided by Hi-C, contigs are often misjoined, resulting ...

utilizes Hi-C data to assign contigs to chromosome scaffolds, arrange contigs into a linear ordering, and then orient the contigs in such a way as to maximize ...

different sample types), or as comprehensive services. A C B Unscaffolded contigs Chromosome-scale scaffolds Figure 1. Overview of proximity ligation-based ...

decreases. C. The Proximo algorithm clusters scaffolded contigs (left) into chromosome groups. Contigs are ordered and oriented to produce a heat map (right) ...

diagnostic procedures. 2 Proximo™ Genome Scaffolding Platform Pre-Hi-C contigs with misjoins Haplotype phasing with FALCON-Phase™ Homologous chromosomes

Nucleome Nucleome Informatics Private Limited

early-stage

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with 46 different types of allergens existing in the database. From the 46 contigs or allergens, 521 B-cell linear epitopes were identified using BepiPred

size and characteristics, we produce an optimized assembly and deliver contigs, scaffolds, and metrics in a variety of standard formats. De novo and Comparative ...

sequence, data is aligned and assembled against the reference. Resulting contigs, scaffolds, and variant records are delivered. Genome Finishing The next

Frasergen

early-stage

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将原始contigs聚类、排序、定向,组装至染色体水平。 Hi-C技术组装染色体水平基因组原理 Hi-C构建染色体水平参考基因组的优势: ① Hi-C包含全基因组互作信息,序列挂载率更高,成本低,性价比高; Dudchenko等人利用Hi-C数据联合已有的埃及伊蚊基因组contigs数据,对

议直接纯三代的100x long read进行组装,常用软件组装软件如HGAP、PBcR、Canu、MARVEL和FALCON ③ 在组装得到contigs后,一般会用前面的三代序列对基因组Polish,如PacBio的Quiver、Arrow,Nanopore的Nanopolish,或Nanopo

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